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Gene analysis

 


o Fast analysis of multiple genes (= Batch analysis)

 

Example 1:  Calculate tAI, CAI and overall GC content of many genes

 

Step 1: Build a collection of genes

1. Make a gene list using Microsoft Excel

2. Save the list as text file format (file extension: txt)

 

 

Or, copy the list to NotePad as shown in the below figure

Save the content as text file format (file extension: txt)

 

 

Step 2. Show 'Gene Repository' window

Click on the 'Batch analysis mode' in the menu

 

Step 3. Import sequence file

Click on the 'Regular text file' in the 'Gene Repository - Batch Analysis Mode' window

 

Step 4. Set column on the 'Gene Repository' window

1. Click on the 'Set table' on the 'Gene Repository - Batch Analysis Mode' window

2. In the 'Viewer setting' window, add new functions.

 

Step 5. recalculate all

Click on the 'Refresh table' button on the 'Gene Repository - Batch Analysis Mode' window

 

Optionally, Export analysis result to Microsoft Excel

1. Export result to clipboard. Check menu: "File" > "Copy Gene Construct List" > "Including full analysis result"

2. Paste clipboard's content to Excel or other software. See the following result figure.

 

 

New update: Directly import Gene List from Clipboard